PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04386g08002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 460aa    MW: 50361.7 Da    PI: 6.9457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04386g08002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12397442655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR +i +++ +L+el+P+     +k  + a++L  Av+YIk+L+
  Niben101Scf04386g08002.1 397 SIAERVRRTKISDRMRRLQELVPNM----DKQTNTADMLDFAVDYIKELE 442
                               689*********************7....688***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881391441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15394453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.00E-11395446No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14396452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8397442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12397447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDQSRFQQQP INSGLTRYRS APSSYFSSLL SSTPSSGGGT NITTGGCGYA RDDFSQLQNS  60
RGSNSTDIEQ VFAKFVASIG NQGSKSGSFS SNEQIQDNPM SNMNVRSDFI VPKQEVKQQH  120
KRLTRHRSSD YSLVSQMNYQ TQAQQHSQSQ SQSQFISSVK QEPEMNYQNL GPQQIDNSKA  180
VTSLAAVDNS FTFMTSVNST RVSPVNIGGG GGADAGNTNL TRYNSSPAGF FDLINIESGY  240
GAIRGVGRYG TGANATTETS LSTPKRLKTQ VGISSGKPPA SPGLMTPISE IGDKVMEENS  300
IGDEHKNDES CIADFPIPSW EDSHILSDDF LKAEDIEIEP FSNVNASDNQ NSEGLSRPPI  360
PLSHHLSLDT STLEKLLQDS TPLNVRAKRG CATHPRSIAE RVRRTKISDR MRRLQELVPN  420
MDKQTNTADM LDFAVDYIKE LEKQVKILAE KRAKCTCTNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793126.10.0PREDICTED: uncharacterized protein LOC104240039 isoform X1
RefseqXP_016451818.10.0PREDICTED: uncharacterized protein LOC107776436
TrEMBLA0A0V0IJ500.0A0A0V0IJ50_SOLCH; Putative transcription factor bHLH-like
STRINGPGSC0003DMT4000567160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-49bHLH family protein